Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs143113780 chr11:36231003 G/C 9.48E-6 294 22.45 21.07 3.47 KM Plot
CESC rs143259804 chr10:135111869 CT/C 5.34E-14 285 23.57 20.05 3.33 KM Plot
CESC rs144346772 chr8:26917946 C/T 7.29E-5 292 15.7 21.2 26.53 KM Plot
CESC rs144679328 chr12:12486084 A/G 0 295 22.83 20.7 0.47 KM Plot
CESC rs144739625 chr1:59089917 C/G 5.45E-5 294 21.23 24.9 13.8 KM Plot
CESC rs144827343 chr11:36229538 GT/G 3.11E-5 295 21.97 21.07 3.47 KM Plot
CESC rs144828878 chr19:11387109 A/G 5.26E-5 293 20.23 21.1 21.2 KM Plot
CESC rs144943703 chr9:136266792 CTGTGAGCCT/C 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs145194890 chr9:115570994 GTT/G 4.01E-9 299 8 19.43 23.3 KM Plot
CESC rs145219333 chr9:115627288 C/CAT 2.3E-5 297 8.43 19.43 23.12 KM Plot
CESC rs145388654 chr8:144405721 C/T 5.14E-5 292 26.5 21.3 18 KM Plot
CESC rs145979674 chr5:96123090 T/C 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs146101575 chr5:126110421 G/T 0 291 21.2 20.77 1.73 KM Plot
CESC rs146341958 chr5:96125159 C/T 1.4E-6 299 21.33 24.08 6.73 KM Plot
CESC rs146509037 chr10:81713762 T/G 4.01E-9 297 25.17 16.42 2.62 KM Plot